Genomics

Dataset Information

0

Mapping Novel Chromatin Regions Using Sono-Seq


ABSTRACT: We found that sonication of crosslinked chromatin produces breaks at non-random sites in DNA and can be used to map sites of high chromatin accessibility when combined with high-throughput tag sequencing using the GA II platform from Illumina. This technique, which we named Sono-Seq, can be a simple and broadly applicable method for mapping many open chromatin sites. Furthermore, these results give insights into reference sample types, such as Input DNA, normal IgG ChIP DNA, MNase-digested DNA, and naked DNA, that have been used in ChIP-chip and ChIP-Seq experiments. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

ORGANISM(S): Homo sapiens

PROVIDER: GSE14022 | GEO | 2008/12/18

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2008-12-18 | E-GEOD-14022 | biostudies-arrayexpress
2016-12-15 | GSE83123 | GEO
2017-02-26 | GSE70122 | GEO
2010-03-02 | E-GEOD-20136 | biostudies-arrayexpress
2019-02-12 | GSE125053 | GEO
2015-03-24 | GSE57149 | GEO
2023-12-12 | PXD042224 | Pride
2023-12-10 | PXD042210 | Pride
2016-04-01 | E-MTAB-3783 | biostudies-arrayexpress
2006-09-01 | GSE4886 | GEO