Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Couzens_MOB1mutants_P86

ABSTRACT: This dataset consists of 26 raw MS files and associated peak lists and result files, all acquired on a Velos Orbitrap mass spectrometer. Two datasets are associated with this manuscript by Xiong et al. that describes the regulation of interactions in the core Hippo pathway. See the README file within Methods and Protocols and the Supplementary File description and peptide and interaction identification results in Supplementary Files.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Gingras

PROVIDER: MSV000080331 | MassIVE | Fri Nov 11 10:21:00 GMT 2016

SECONDARY ACCESSION(S): PXD005327

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Couzens_Hippo_interactome_set3_P86_VS5_VS6_June22_2013

Project description:Interaction proteomics; FLAG AP-MS. Supplementary files for the Hippo Interactome manuscript by Couzens et al. This dataset consists of 20 files (specificity of MOB1 vs MOB4 and okadaic acid time course). See "README" file and sample description in the "Methods and Protocols" folder.

2013-06-22 | MSV000078446 | MassIVE

StDenis_Mitosis_P103_VS14_VS15_BioID_Velos

Project description:This dataset consists of 145 raw MS files and associated peak lists and result files, all acquired on a Thermo Velos Orbitrap mass spectrometer. Three datasets are associated with this manuscript by St-Denis et al. that describes the interactome for human phosphatases and the function of phosphatases in mitosis. See the README file within Methods and Protocols and the Supplementary File description and peptide and interaction identification results in Supplementary Files.

2016-07-07 | MSV000079890 | MassIVE

StDenis_Mitosis_P84_VS10_VS13_FLAG_Velos

Project description:This dataset consists of 196 raw MS files and associated peak lists and result files, all acquired on a Velos Orbitrap mass spectrometer. Three datasets are associated with this manuscript by St-Denis et al. that describes the interactome for human phosphatases and the function of phosphatases in mitosis. Note that the negative controls and the myotubularin data were also submitted separately as part of a publication on the Myotubularin interactome (St-Denis et al., Mol Cell Proteomics, 2015; PMID 25659891) and assigned to MassIVE ID MSV000078915. See the README file within Methods and Protocols and the Supplementary File description and peptide and interaction identification results in Supplementary Files.

2016-07-07 | MSV000079891 | MassIVE

StDenis_Mitosis_P84_VS10_VS13_FLAG_LTQ

Project description:This dataset consists of 177 raw MS files and associated peak lists and result files, all acquired on a Thermo LTQ mass spectrometer. Three datasets are associated with this manuscript by St-Denis et al. that describes the interactome for human phosphatases and the function of phosphatases in mitosis. See the README file within Methods and Protocols and the Supplementary File description and peptide and interaction identification results in Supplementary Files.

2016-07-06 | MSV000079889 | MassIVE

Genetic variants in Major Histocompatibility Complex-linked genes Associate with Pediatric Liver Transplant Rejection

Project description:Limited access to large samples and independent replication cohorts precludes genome-wide association (GWA) studies of rare but complex traits. To localize candidate genes in an on-going study utilizing family-based GWA, a novel exploratory analysis was first tested on 1,774 major histocompatibility complex single nucleotide polymorphisms (SNPs) in 240 DNA samples from 80 children with primary liver transplantation (LTx), and their biological parents. Genotyping was performed using the Illumina HumHap550k SNP BeadArray; the genotype calls for the 1813 SNPs in the MHC region are provided in the genotype_data.zip supplementary file linked to this series (see README file in the zip archive for more information). The Affymetrix Human Exon 1.0 ST array was used to measure differential splicing patterns in archived RNA isolated from 26 of 80 children for genes found near associated SNPs. This SuperSeries is composed of the SubSeries listed below.

2008-09-15 | GSE11361 | GEO

Transcription profiling of human adrenocortical carcinomas (33), adenomas (22), and normal adrenal cortex (10)

Project description:Human samples of 33 adrenocortical carcinomas, 22 adrenocortical adenomas, and 10 normal adrenal cortex samples, each from a different patient, had mRNA assays performed using Affymetrix HG_U133_plus_2 arrays, with 54675 probe-sets. Experiment Overall Design: Two supplementary files are attached below. The Adrenocortical_logs.xls file shows the log-transformed probe-set values and the results of a statistical analysis for each probe-set. The Readme file describes the columns of this log file.

2009-02-07 | E-GEOD-10927 | biostudies-arrayexpress

Gingras_Mui_E4orf4_interactions_P107_V5

Project description:This submission includes the mass spectrometry data for the manuscript by Mui et al. (E4orf4 interactome). This submission contains 16 files for E4orf4 WT or mutant interactions from HEK293 cells, acquired on LTQ Orbitrap Velos and LTQ Orbitrap Elite. See the README file within "Methods and Protocols" and the accompanying File description and peptide and interaction identification results.

2015-03-20 | MSV000079082 | MassIVE

High resolution analysis of genomic imprinting in the embryonic and adult mouse brain AND Sex-specific imprinting in the mouse brain

Project description:Genomic imprinting results in the preferential expression of the paternal, or maternal allele of certain genes. We have performed a genome-wide characterization of imprinting in the mouse embryonic and adult brain using F1 hybrid mice generated from reciprocal crosses of CASTEiJ and C57BL/6J mice. We also uncovered genes associated with sex specific parental effects in the adult mouse brain. Our study identified preferential selection of the maternally inherited X chromosome in glutamatergic neurons of the female cortex. Examination of allele specific expression in the brains of reciprocal crosses of F1 hybrid mice from CASTEiJ and C57BL/6J crosses. Processed data files (GenomicAligned, SNP_calls, TranscriptomeAligned, fRNAdbAligned) and README file linked below as supplementary files.

2010-07-08 | E-GEOD-22131 | biostudies-arrayexpress

Project description:This submission is part of the mass spectrometry datasets for the manuscript by St-Denis et al. entitled: Myotubularin-related proteins 3 & 4 interact with PLK1 and CEP55 to control CEP55 recruitment to the midbody and ensure proper abscission. This submission contains 82 RAW files and 82 mgf files, all acquired on a Velos Orbitrap mass spectrometer, as well as results files. See the README file within Methods and Protocols and the accompanying File description.

2014-10-30 | MSV000078915 | MassIVE

Rat liver: Control vs. Chemical treated, 14 days

Project description:The final goal of this study is to develop a short term and highly accurate prediction method of carcinogenicity based on gene expression profiles of rats subjected to carcinogen exposure. We conducted 3 day-, 14 day- and 28 day-repeated dose experiments in male F344 rats with 47 carcinogens and 26 non-carcinogens, and the gene expression profiles in liver were investigated by custom glass microarrays. Supplementary file "73 Compounds for training" indicates 47 carcinogens and 26 non-carcinogens. Supplementary file "15 Compounds for test" lists the other compounds which are for test.

2009-06-23 | GSE16743 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data