Proteomics

Dataset Information

0

Effect of control siRNA knockdown on EndoC-bH1 cell lysate proteome (pilot TMT experiment)


ABSTRACT: EndoC-bH1 cells proteomics was assessed in untreated baseline condition and after treatment with control siRNA at 24, 48 and 72 hours. Unpowered exploratory experiment. Sample size: triplicate per condition.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Type B Pancreatic Cell, Endocrine Pancreas, Cell Culture

SUBMITTER: Maria Ryaboshapkina  

LAB HEAD: Raphael Scharfmann

PROVIDER: PXD027898 | Pride | 2022-04-07

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
PE167_2019_GP_PCSK9_A.msf Msf
PE167_2019_GP_PCSK9_A.msfView Msf
PE167_2019_GP_PCSK9_A.pdResult Other
PE167_2019_GP_PCSK9_A.pdResultView Other
PE167_2019_GP_PCSK9_A.pdStudy Other
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Publications

Characterization of the Secretome, Transcriptome, and Proteome of Human β Cell Line EndoC-βH1.

Ryaboshapkina Maria M   Saitoski Kevin K   Hamza Ghaith M GM   Jarnuczak Andrew F AF   Pechberty Séverine S   Berthault Claire C   Sengupta Kaushik K   Underwood Christina Rye CR   Andersson Shalini S   Scharfmann Raphael R  

Molecular & cellular proteomics : MCP 20220402 5


Early diabetes research is hampered by limited availability, variable quality, and instability of human pancreatic islets in culture. Little is known about the human β cell secretome, and recent studies question translatability of rodent β cell secretory profiles. Here, we verify representativeness of EndoC-βH1, one of the most widely used human β cell lines, as a translational human β cell model based on omics and characterize the EndoC-βH1 secretome. We profiled EndoC-βH1 cells using RNA-seq,  ...[more]

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