Dataset Information

Dynamic changes in the proteome of early bovine embryos developed in vivo

ABSTRACT: Early embryo development is a dynamic process involving important molecular and structural changes leading to the embryonic genome activation (EGA) and first cell lineage differentiation. Our aim was to elucidate proteomic changes in bovine embryos developed in vivo. Eleven Holstein females were used as embryo donors and pools of embryos at the 4-6 cell, 8-12 cell, morula, compact morula and blastocyst stages were analyzed by nanoliquid chromatography coupled with tandem MS (nanoLC-MS/MS). A total of 2757 proteins were identified, of which 1950 were quantitatively analyzed. Principal component analysis of data showed a separation of embryo pools according to their developmental stage. Differentially abundant proteins (DAPs) between stages were clustered into 626 upregulated and 400 downregulated proteins with most significant changes at the time of EGA and blastocyst formation. The main pathways and processes overrepresented among upregulated proteins were RNA metabolism, protein translation and ribosome biogenesis whereas Golgi vesicle transport and protein processing in endoplasmic reticulum were overrepresented among downregulated proteins. This is the first comprehensive study of proteome dynamics in non-rodent mammalian embryos developed in vivo. These data provide a number of functional protein candidates and will be useful to evaluate the impact of in vitro conditions on embryo quality.

INSTRUMENT(S): timsTOF Pro

ORGANISM(S): Bos Taurus (bovine)

TISSUE(S): Embryo

SUBMITTER: E Com

LAB HEAD: Charles Pineau

PROVIDER: PXD030994 | Pride | 2022-05-20

REPOSITORIES: Pride

ACCESS DATA

Dataset's files

Source:

			Action	DRS
	346_4-6_P1_vivo_Slot1-19_1_2367.d.7z	Other
	346_4-6_P1_vivo_Slot1-19_1_2367_DA5.2.216_1__F77634_346_4-6_P1_vivo_.mzid.gz	Mzid
	346_4-6_P1_vivo_Slot1-19_1_2367_DA5.2.216_1__F77634_346_4-6_P1_vivo_.mzid_346_4-6_P1_vivo_Slot1-19_1_2367_DA5.2.216_1__F77634_346_4-6_P1_vivo_.MGF	Mzid
	346_4-6_P2_vivo_Slot1-28_1_2399.d.7z	Other
	346_4-6_P2_vivo_Slot1-28_1_2399_DA5.2.216_1__F77681_346_4-6_P2_vivo_.mzid.gz	Mzid

Items per page:

1 - 5 of 55

Publications

Dynamic Changes in the Proteome of Early Bovine Embryos Developed <i>In Vivo</i>.

Banliat Charles C Mahé Coline C Lavigne Régis R Com Emmanuelle E Pineau Charles C Labas Valérie V Guyonnet Benoit B Mermillod Pascal P Saint-Dizier Marie M

Frontiers in cell and developmental biology 20220321

Early embryo development is a dynamic process involving important molecular and structural changes leading to the embryonic genome activation (EGA) and early cell lineage differentiation. Our aim was to elucidate proteomic changes in bovine embryos developed <i>in vivo</i>. Eleven females were used as embryo donors and pools of embryos at the 4-6 cell, 8-12 cell, morula, compact morula and blastocyst stages were analyzed by nanoliquid chromatography coupled with label free quantitative mass spec ...[more]

PMID: 35386205

Similar Datasets

Project description:Despite many improvements with in vitro culture systems, the quality and developmental ability of mammalian embryos produced in vitro is still lower than their in vivo counterparts. To bring knowledge to answer this question, we used a mass spectrometry (MS) approach to compare the protein content of bovine embryos that were conceived in vivo or produced in vitro. A total of 38 pools of grade-1 quality bovine embryos at the 4-6 cell, 8-12 cell, morula, compact morula and blastocyst stages developed either in vivo or in vitro were analyzed by nano-liquid chromatography coupled with label-free quantitative mass spectrometry, allowing the identification of 3,028 proteins. Multivariate analysis of quantified proteins showed a clear separation of embryo pools according to their in vivo or in vitro origin at all stages. Three clusters of differentially abundant proteins (DAPs) according to embryo origin were evidenced, including 463 proteins more abundant in vivo than in vitro across development, and 314 and 222 proteins more abundant in vitro than in vivo before and after the morula stage, respectively. The functional analysis of proteins found more abundant in vivo showed an enrichment in carbohydrate metabolism and cytoplasmic cellular components. Proteins found more abundant in vitro before the morula stage were mostly localized in mitochondrial matrix and involved in ATP-dependent activity while those overabundant after morula stage were mostly localized in the ribonucleoprotein complex and involved in protein synthesis. Oviductin and other proteins previously shown to interact with early embryos in vitro were among the most overabundant proteins after in vivo development. In conclusion, the maternal environment led to faster degradation of mitochondrial proteins at early embryo developmental stages, lower abundance of proteins involved in protein synthesis at the time of embryonic genome activation and a global upregulation of carbohydrate and small molecule metabolic pathways compared to in vitro produced embryos. Furthermore, our data confirm that embryos developed in vivo uptake large amounts of oviduct fluid-derived proteins as soon as the 4-6 cell stage. These data provide new insight into the molecular contribution of the mother to the developmental ability of early embryos and will help designing better in vitro culture systems.