Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Stenotus rubrovittatus

ABSTRACT: The transcriptomes to identify insect mitochondrial transporters

PROVIDER: PRJDB2008 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR018505_1.fastq.gz	Fastqsanger.gz
	DRR018505_2.fastq.gz	Fastqsanger.gz
	DRR018506_1.fastq.gz	Fastqsanger.gz
	DRR018506_2.fastq.gz	Fastqsanger.gz
	DRR018507_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Hemiptera

Project description:The transcriptomes to identify hemipteran insect mitochondrial transporters

| PRJDB4332 | ENA

Liriomyza chinensis

Project description:The transcriptomes to identify insect phosphate carriers

| PRJDB5165 | ENA

Heterogeneous Expression of Nuclear Encoded Mitochondrial Genes Distinguishes Inhibitory and Excitatory Neurons.

Project description:Mitochondrial composition varies by organ and their constituent cell types. This mitochondrial diversity likely determines variations in mitochondrial function. However, the heterogeneity of mitochondria in the brain remains underexplored despite the large diversity of cell types in neuronal tissue. Here, we used molecular systems biology tools to address whether mitochondrial composition varies by brain region and neuronal cell type. We reasoned that proteomics and transcriptomics of microdissected brain regions combined with analysis of single cell mRNA sequencing could reveal the extent of mitochondrial compositional diversity. We selected nuclear encoded gene products forming complexes of fixed stoichiometry, such as the respiratory chain complexes and the mitochondrial ribosome, as well as molecules likely to perform their function as monomers, such as the family of SLC25 transporters. We found that only the proteome encompassing these nuclear-encoded mitochondrial genes and obtained from microdissected brain tissue segregated the hippocampus, striatum, and cortex from each other. Nuclear-encoded mitochondrial transcripts could only segregate cell types and brain regions when the analysis was performed at the single cell level. In fact, single cell mitochondrial transcriptomes were able to distinguish glutamatergic and distinct types of GABAergic neurons from one another. Within these cell categories, unique SLC25A transporters were able to identify distinct cell subpopulations. Our results demonstrate heterogeneous mitochondrial composition across brain regions and cell types. We postulate that mitochondrial heterogeneity influences regional and cell type specific mechanisms in health and disease.

2022-02-17 | PXD026104 | Pride

Xenorhabdus nematophila FliZ regulon identification by RNA-Seq

2013-05-27 | GSE47365 | GEO

High-throughput sequencing of small RNA transcriptomes in Locusta migratoria

Project description:All the reports on insect small RNAs come from holometabolous insects. However, small RNAs of hemimetabolous insects have not yet been investigated.Study of hemimetabolous insect small RNAs could provide more insights into evolution and function of small RNAs in hemi- and holometabolous insects. The locust is an important, economically harmful hemimetabolous insect and its phase changes is an interesting phenomenon.Here, we used high-throughput sequencing to characterize and compare the small RNA transcriptomes of gregarious and solitary phases in locusts. We found abundant small RNAs and their different expression profiles in the two phases.

2009-01-16 | GSE12640 | GEO

Project description:Insect mitochondrial genome

| PRJNA979184 | ENA

Symphoromyia crassicornis

Project description:Insect mitochondrial genome

| PRJNA794973 | ENA

Project description:insect mitochondrial genomes

| PRJNA758734 | ENA

Xenorhabdus nematophila FliZ regulon identification by RNA-Seq

Project description:A fliZ mutant in the entomopathogenic bacterium X. nematophila is attenuated in virulence in the insect. The goal of this study is to compare transcriptomes of the fliZ mutant and wild type strain to identify the FliZ regulon. Two biological replicates of total RNA from exponential cultures of WT strain and fliZ mutant were analysed by deep sequencing, using Illumina HiSeq 2000.

2013-05-27 | E-GEOD-47365 | biostudies-arrayexpress

Project description:Study insect mitochondrial genome.

| PRJNA932857 | ENA