Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

PROVIDER: PRJNA243368 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1213581_1.fastq.gz	Fastqsanger.gz
	SRR1213581_2.fastq.gz	Fastqsanger.gz
	SRR1213582_1.fastq.gz	Fastqsanger.gz
	SRR1213582_2.fastq.gz	Fastqsanger.gz
	SRR1213583_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

E-GEOD-56462

Project description:Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

2023-06-15 | E-GEOD-56462 | ExpressionAtlas

E-GEOD-56463

Project description:Transcriptome profiling of various organs at different developmental stages in rice (single-end)

2023-06-15 | E-GEOD-56463 | ExpressionAtlas

Oryza sativa Japonica Group

Project description:Transcriptome profiling of various organs at different developmental stages in rice (single-end)

| PRJNA243371 | ENA

Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

2015-11-25 | GSE56462 | GEO

Oryza sativa Japonica Group

Project description:Spatio-temporal gene expression of various tissues/organs throughout entire growth in rice

| PRJNA129491 | ENA

Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

Project description:To identificate long noncoding RNAs in rice, we profiled transcriptome of various organs at different developmental stages using nondirectional paired-end RNA-seq based on poly(A) selection. Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds.

2015-11-25 | E-GEOD-56462 | biostudies-arrayexpress

Transcriptome profiling of various organs at different developmental stages in rice (single-end)

Project description:To identificate long noncoding RNAs in rice, we profiled transcriptome of various organs at different developmental stages using stranded single-end RNA-seq based on poly(A) selection.

2015-11-25 | GSE56463 | GEO

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Oryza sativa Japonica Group Illumina paired end sequencing data

| PRJNA158009 | ENA

Oryza sativa Japonica Group

Project description:Comprehensive gene expression profiling of the rice root system based on developmental stages and tissue types

| PRJNA143833 | ENA