Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-56463

ABSTRACT: Transcriptome profiling of various organs at different developmental stages in rice (single-end)

TISSUE(S): Flower, Root, Seed, Flower Bud, Leaf, Milk Grain

PROVIDER: E-GEOD-56463 | ExpressionAtlas | 2023-06-15

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-56463-analysis-methods.tsv	Tabular
	E-GEOD-56463-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-56463-coexpressions.tsv.gz	Tabular
	E-GEOD-56463-configuration.xml	Xml
	E-GEOD-56463-factors.xml	Xml

Items per page:

1 - 5 of 42

Similar Datasets

Oryza sativa Japonica Group

Project description:Transcriptome profiling of various organs at different developmental stages in rice (single-end)

| PRJNA243371 | ENA

Transcriptome profiling of various organs at different developmental stages in rice (single-end)

2015-11-25 | GSE56463 | GEO

Oryza sativa Japonica Group

Project description:Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

| PRJNA243368 | ENA

Transcriptome profiling of various organs at different developmental stages in rice (single-end)

Project description:To identificate long noncoding RNAs in rice, we profiled transcriptome of various organs at different developmental stages using stranded single-end RNA-seq based on poly(A) selection. Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds.

2015-11-25 | E-GEOD-56463 | biostudies-arrayexpress

Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

2015-11-25 | GSE56462 | GEO

E-GEOD-56462

Project description:Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

2023-06-15 | E-GEOD-56462 | ExpressionAtlas

Transcriptome profiling of various organs at different developmental stages in rice (paired-end)

Project description:To identificate long noncoding RNAs in rice, we profiled transcriptome of various organs at different developmental stages using nondirectional paired-end RNA-seq based on poly(A) selection. Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds.

2015-11-25 | E-GEOD-56462 | biostudies-arrayexpress

RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments

Project description:Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas Samples of 38 developmental stages from egg to juvenile were analyzed using single-end 49 bp RNA-seq. Two libraries mixed by RNAs from different developmental stages were analyzed using paired-end 90 bp RNA-seq. A total of 11 samples mainly from 8 organs (mantle, gill,adductor muscle, digestive gland, hemocyte, labial palp, female gonad and male gonad) were analyzed using paired-end 90 bp RNA-seq. At the same time, single-end 49 bp RNA-seq was conducted on 61 samples collected from adult oysters subjected to 9 types of environmental stressors (exposure to air, salinity, temperature, and exposure to metals).

2012-09-13 | E-GEOD-31012 | biostudies-arrayexpress

Whole transcriptome sequencing of wheat 3B chromosome

Project description:To study the expression profiles of hexaploid wheat chromosome 3B genes during the life cycle of a wheat plant and establish a transcriptome atlas for this chromosome, deep transcriptome sequencing was conducted in duplicates in 15 wheat samples corresponding to five different organs (leaf, shoot, root, spike, and grain) at three developmental stages each. Strand-non-specific and strand-specific libraries were used to produce 2.52 billion paired-end reads (232 Gb) and 615.3 single-end reads (62 Gb), respectively.

2014-09-08 | E-MTAB-4484 | biostudies-arrayexpress

Spatio-temporal gene expression of various tissues/organs throughout entire growth in rice

Project description:An overview of the expression pattern of all rice genes under natural field conditions based on microarray analysis of different organs and tissues at various stages of growth and development from transplanting to harvesting.

2011-01-13 | GSE21396 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data