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Wolf2000_Glycolytic_Oscillations

ABSTRACT: Model reproduces the dynamics of ATP and NADH as depicted in Fig 4 of the paper. Model successfully tested on Jarnac and MathSBML. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

SUBMITTER: Harish Dharuri  

PROVIDER: BIOMD0000000206 | BioModels | 2024-09-02

REPOSITORIES: BioModels

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Dataset's files

Source:
Action DRS
BIOMD0000000206?filename=BIOMD0000000206-biopax2.owl Owl
BIOMD0000000206?filename=BIOMD0000000206-biopax3.owl Owl
BIOMD0000000206?filename=BIOMD0000000206-matlab.m Other
BIOMD0000000206?filename=BIOMD0000000206-octave.m Other
BIOMD0000000206?filename=BIOMD0000000206.m Other
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Publications

Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations.

Wolf J J   Passarge J J   Somsen O J OJ   Snoep J L JL   Heinrich R R   Westerhoff H V HV  

Biophysical journal 20000301 3

Under certain well-defined conditions, a population of yeast cells exhibits glycolytic oscillations that synchronize through intercellular acetaldehyde. This implies that the dynamic phenomenon of the oscillation propagates within and between cells. We here develop a method to establish by which route dynamics propagate through a biological reaction network. Application of the method to yeast demonstrates how the oscillations and the synchronization signal can be transduced. That transduction is  ...[more]

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