Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Protein surface recognition using geometrically pure Ru(II) tris(bipyridine) derivatives.

ABSTRACT: This manuscript illustrates that the geometric arrangement of protein-binding groups around a ruthenium(II) core leads to dramatic differences in cytochrome c (cyt c) binding highlighting that it is possible to define synthetic receptors with shape complementarity to protein surfaces.

SUBMITTER: Filby MH

PROVIDER: S-EPMC3172587 | biostudies-literature | 2011 Jan

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Protein surface recognition using geometrically pure Ru(II) tris(bipyridine) derivatives.

Filby Maria H MH Muldoon James J Dabb Serin S Fletcher Nicholas C NC Ashcroft Alison E AE Wilson Andrew J AJ

Chemical communications (Cambridge, England) 20101123 1

This manuscript illustrates that the geometric arrangement of protein-binding groups around a ruthenium(II) core leads to dramatic differences in cytochrome c (cyt c) binding highlighting that it is possible to define synthetic receptors with shape complementarity to protein surfaces. ...[more]

PMID: 21103575

Similar Datasets

Protein destabilisation by ruthenium(II) tris-bipyridine based protein-surface mimetics.

Project description:Highly functionalised ruthenium(II) tris-bipyridine receptor 1 which acts as a selective sensor for equine cytochrome c (cyt c) is shown to destabilise the native protein conformation by around 25 °C. Receptors 2 and 3 do not exert this effect confirming the behaviour is a specific effect of molecular recognition between 1 and cyt c, whilst the absence of a destabilising effect on 60% acetylated cyt c demonstrates the behaviour of 1 to be protein specific. Molecular recognition also modifies the conformational properties of the target protein at room temperature as evidenced by ion-mobility spectrometry (IMS) and accelerated trypsin proteolysis.

| S-EPMC3731202 | biostudies-literature

Tris(2,2'-bipyridine)-copper(II) penta-cyanido-nitro-soferrate(II) methanol disolvate monohydrate.

Project description:The title complex [Cu(C10H8N2)3][Fe(CN)5(NO)]·2CH3OH·H2O, consists of discrete [Cu(bpy)3](2+) cations (bpy is 2,2'-bipyridine), [Fe(CN)5NO](2-) anions and solvent mol-ecules of crystallization (two methanol mol-ecules and one water mol-ecules per asymmetric unit). The Cu(II) ion adopts a distorted octa-hedral environment, coordinated by six N atoms from three bpy ligands. The cation charge is balanced by a nitro-prusside counter-anion, which has a slightly distorted octa-hedral coordination geometry. In the crystal, anions and solvent mol-ecules are involved in O-H⋯N and O-H⋯O hydrogen bonds, which form chains along [100]. The cations are located between these chains.

| S-EPMC3629489 | biostudies-literature

Tris(2,2'-bipyridine)-nickel(II) hexa-molybdate.

Project description:The asymmetric unit of the title compound, [Ni(C(10)H(8)N(2))(3)][Mo(6)O(19)], consists of one complex [(Ni(C(10)H(8)N(2))(3)](2+) cation and one Lindqvist-type [Mo(6)O(19)](2-) polyanion. The Ni(2+) ion is in a distorted octa-hedral coordination by six N atoms from three chelating 2,2'-bipyridine ligands. The Lindqvist-type anion exhibits the characteristic Mo-O bond-length distribution, with the shortest bonds being the Mo-O(terminal) bonds [mean = 1.679?(2)?Å] and the longest being those to the central O atom [mean = 2.318?(7)?Å]. A number of C-H?O inter-actions contribute to the crystal packing.

| S-EPMC3007854 | biostudies-other

Tris(2,2'-bipyridine-?(2) N,N')cobalt(II) bis-(hexa-fluoridophosphate).

Project description:In the title compound, [Co(C10H8N2)3](PF6)2, the Co(II) atom is coordinated by the six N atoms of three 2,2'-bipyridyl ligands and adopts a highly distorted octa-hedral geometry. The crystal used was a merohedral twin, the refined ratio of twin components being 0.820?(1):0.180?(1). The crystal structure features weak C-H?F inter-actions, forming a three-dimensional network.

| S-EPMC3588389 | biostudies-literature

Base-enhanced catalytic water oxidation by a carboxylate-bipyridine Ru(II) complex.

Project description:In aqueous solution above pH 2.4 with 4% (vol/vol) CH3CN, the complex [Ru(II)(bda)(isoq)2] (bda is 2,2'-bipyridine-6,6'-dicarboxylate; isoq is isoquinoline) exists as the open-arm chelate, [Ru(II)(CO2-bpy-CO2(-))(isoq)2(NCCH3)], as shown by (1)H and (13)C-NMR, X-ray crystallography, and pH titrations. Rates of water oxidation with the open-arm chelate are remarkably enhanced by added proton acceptor bases, as measured by cyclic voltammetry (CV). In 1.0 M PO4(3-), the calculated half-time for water oxidation is ∼7 μs. The key to the rate accelerations with added bases is direct involvement of the buffer base in either atom-proton transfer (APT) or concerted electron-proton transfer (EPT) pathways.

| S-EPMC4413278 | biostudies-literature

Supramolecular Pt(II) and Ru(II) Trigonal Prismatic Cages Constructed with a Tris(pyridyl)borane Donor.

Project description:We report a novel example of supramolecular cages containing a Lewis acidic trigonal boron center. Self-assembly of the tris(pyridyl)borane donor 1 with diruthenium (2) or platinum (3), as an electron acceptor, furnished boron-containing trigonal prismatic supramolecular cages 5 and 6, which were characterized by 1H NMR and electrospray ionization time-of-flight mass spectroscopy and X-ray crystallography. The molecular structure of cage 5 was confirmed as a trigonal prismatic cage with an inner dimension of about 400 Å3. The fluoride binding properties of borane ligand 1 and Pt cage 6 were studied. UV/vis absorption titration studies demonstrated that the boron center of cage 6 undergoes strong binding interaction with the fluoride ion, with an estimated binding constant of 1.3 × 1010 M-2 in acetone based on the 1:2 binding isotherm. The binding was also confirmed by 1H NMR titration. Photoluminescence titration studies showed that cage 6 emitted borane-centered fluorescence (τ = 2.21 ns), which was gradually quenched upon addition of fluoride. When excess fluoride was added to a solution of 6, however, dissociation of the pyridyl ligand from the Pt(II) center was observed.

| S-EPMC6402499 | biostudies-literature

Tris(2,2'-bipyridine-?N,N')cadmium(II) bis-(perchlorate) hemihydrate.

Project description:The asymmetric unit of the title compound, [Cd(C(10)H(8)N(2))(3)](ClO(4))(2)·0.5H(2)O, consists of one complex [Cd(bpy)(3)](2+) cation (bpy = 2,2'-bipyridine), two perchlorate anions and one water molecule with half-occupancy. The central cadmium(II) ion is bound to six N atoms from three bpy ligands in a distorted octa-hedral coordination, with Cd-N bond distances ranging from 2.304?(3) to 2.395?(2)?Å.

| S-EPMC2967850 | biostudies-other

Strategy for the stereochemical assignment of tris-heteroleptic Ru(II) complexes by NMR spectroscopy.

Project description:The relative stereochemistry of tris-heteroleptic ruthenium complexes [Ru(pp)(pp')(pp'')](PF(6))(2), where pp = 1,10-phenanthroline-4-carboxamide, pp' = 5,6-dimethyl-1,10-phenanthroline, and pp'' = 7,8-dimethyl dipyrido[3,2-a:2',3'-c]phenazine, was studied using NMR spectroscopy. The (1)H and (13)C spectra were assigned by using double-quantum-filtered correlation spectroscopy (DQF-COSY), heteronuclear single-quantum correlation (HSQC), and heteronuclear multiple-bond correlation (HMBC) experiments for the two diastereomers, each a pair of enantiomers. Nuclear Overhauser effect contacts between the neighboring ligands differentiated the two halves of each symmetrical ligand, thus enabling a full assignment of the NMR signals and an accurate determination of the relative stereochemistry of the complexes. The introduction of an additional chiral center to ligand pp by coupling it with L-lysine caused removal of the enantiomerism. Thus, four diastereomers were observed and their relative stereochemistry determined.

| S-EPMC2631646 | biostudies-literature

Tris(2,2'-bipyridine)-cobalt(II) μ(6)-oxido-dodeca-μ(2)-oxido-hexa-oxidohexa-molydate(VI).

Project description:In the title compound, [Co(C(10)H(8)N(2))(3)][Mo(6)O(19)], the Co(2+) cation is surrounded in a distorted octa-hedral coordination by six N atoms from three 2,2'-bipyridine ligands. The distribution of Mo-O bond lengths in the Lindqvist isopolyanion is consistent with other structures containing the same unit. In the crystal, the cations and anions are linked by C-H⋯O inter-actions.

| S-EPMC3006945 | biostudies-literature

Promoting P450 BM3 heme domain dimerization with a tris(5-iodoacetamido-1,10-phenanthroline)Ru(II) complex.

Project description:Protein dimerization often occurs in many biological systems as to provide structural and functional advantages. A tris(5-iodoacetamido-1,10-phenanthroline)Ruthenium(II) complex was shown to promote the covalent dimerization of a P450 BM3 heme domain mutant containing a surface exposed non-native single cysteine residue. The formation of homodimeric species was confirmed by protein gel electrophoresis, mass spectrometry and UV-Vis spectroscopy. The dimeric species could be separated from the monomer and aggregates by size-exclusion chromatography. Docking simulation reveals a plausible structure with two proteins covalently conjugated to the inorganic compound.

| S-EPMC7769117 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data