Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single-cell RNAseq of whole B6 mouse E8.25 embryos

ABSTRACT: Single-cell RNAseq of whole B6 mouse E8.25 embryos

PROVIDER: PRJEB26819 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Single-cell RNAseq of whole B6 mouse E8.25 embryos

Project description:Gastrulation represents a pivotal point in mammalian development, when the basic body plan is established and cells are specified into one of the three germ layers. This is followed by rapid diversification into specific lineages and the appearance of the various cell types required to build each of the organs. The rich variety of cell types present at this stage has never been rigorously characterised in any mammalian organism, and thus insight into cell fate decisions and the underlying regulatory networks have been inaccessible. We have used droplet based single-cell RNA-sequencing to address this by profiling ~20000 cells from C57BL/6 E8.25 mouse embryos.

2017-12-01 | E-MTAB-6153 | biostudies-arrayexpress

Timecourse single-cell RNAseq of whole mouse embryos harvested between days 6.5 and 8.5 of development.

Project description:We have captured 100,000 single cells for single-cell RNAseq from whole mouse embryos during gastrulation and organogenesis, spanning days 6.5 to 8.5 of development, including embryonic and extraembryonic tissues. Cells were sampled every six hours, providing a continuous molecular characterisation of these processes. Cell libraries were prepared using the 10X Genomics Chromium platform.

2018-12-05 | E-MTAB-6967 | biostudies-arrayexpress

Single-cell RNAseq of whole mouse E8.25 embryos

2017-12-01 | E-MTAB-5728 | biostudies-arrayexpress

Timecourse single-cell RNAseq of whole mouse embryos harvested between days 6.5 and 8.5 of development.

Project description:Timecourse single-cell RNAseq of whole mouse embryos harvested between days 6.5 and 8.5 of development.

| PRJEB28586 | ENA

Comparison of B6/D2 Whole Brain Alternative Splicing

Project description:This dataset consists of whole brain samples from 10 B6 and 12 D2 mice, in order to assess the amount of strain-specific alternative splicing.

2011-05-10 | GSE27282 | GEO

Comparison of B6/D2 Whole Brain Alternative Splicing

Project description:This dataset consists of whole brain samples from 10 B6 and 12 D2 mice, in order to assess the amount of strain-specific alternative splicing. This design consists of whole brain total RNA samples from 10 B6 and 12 D2 mice

2011-05-10 | E-GEOD-27282 | biostudies-arrayexpress

WT and Aire-KO B6 MEChi RNAseq profiling

Project description:WT and Aire-KO B6 MEChi RNAseq profiling

| PRJNA736991 | ENA

Spen regulates X chromosome inactivation (RNAseq in SPEN KO embryos)

Project description:RNAseq on Spen KO hybrid embryos.

2019-12-08 | GSE132557 | GEO

Gene expression data from teratomas formed by C57BL/6 (B6) ES and EiPS cells in B6 mice

Project description:Embryonic fibroblast from C57BL/6 (B6) mice were reprogrammed to EiPS without exogenous DNA integration using an single episomal vector. The EiPS cells and B6 ES cells were then transplanted into B6 mice to form teratomas. We used microarrays to profile the gene expression differences between the teratomas formed by B6 ES cells and EiPS cells.

2011-04-13 | GSE28573 | GEO

Metabolic profiling of identified single cells in Xenopus laevis embryos

Project description:Single D11 cells were identified in 16-cell embryos of Xenopus laevis. Metabolites were extracted, and the extracts were analyzed using a custom-built capillary electrophoresis electrospray ionization platform coupled to a quadrupole time-of-flight mass spectrometer. The resulting metadata was analyzed by Trace, a custom-design software, designed to extract molecular feautres from trace-sensitive metabolomics experiments. The results were validated against molecular features that were extracted by manual curation of the same raw mass spectrometer files.

2018-07-25 | ST001028 | MetabolomicsWorkbench

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data